Ponyfreak and I cut apart a Gen 2 intake. We found that the design is terrible:
The runners favor the secondaries on some cylinders, the primaries on others, and some are equally distributed. This gives unpredictable characteristics to performance.
The intake design itself is flawed due to the way the intake is cast. It does not have seperate runners like the Gen 1, it has 8 sections inside the plenum that each turn into runners. It does not distribute air well due to how the runners are shaped.
The throttlebody to plenum transition is choked, not allowing air to flow well from the TB to the plenum.
The work that you would put into making a Gen 2 intake flow well would far exceed any gains you MAY see from attempting to improve it. You would be better off paying for a Cobra. Keep in mind, I am one of the most frugal car modifiers out there. If
I would bite the bullet and pay for the Cobra intake, that's probably the way to go.
Good luck.