you can delete the extra power pin as it is not needed. I wrapped mine up in electrical tape and inserted it in to the plug.
re-pinning is done so you can retain your 97 controls/MLPS/TCC, etc
I used a new TCC solenoid and trimmed the plastic connector down so it would fit under the circuit board.
buy model-year specific parts (i.e. 97 MLPS, TCC solenoid, etc) and the re-pin takes care of making them work. Your PCM is still the same so the re-wiring allows it to communicate with the circuit board of the new tranny.
best mod out there is a 98+ trans in to a pre-98.
while its out, upgrade your converter to a mach 1/Marauder TC.
keep in mind the angle of the plug you are staring at as you re-pin it...the drawings on TCCOA that is. (from behind, not from the front)