That's what i've been saying from the get go. Clutches in the diff. If the dealer didn't realize this is the problem, then there's a problem with the dealer. Maybe your rear brakes were fubared, who knows. But that's not the cause of a problem under acceleration, and if that was their diagnosis, that tech needs some reeducation.
Really, this problem should not cause any further problems, so you could just forget about it and hope it goes away. It's not good, though, and there's a small possibility it can cause other damage. Just a small one though.
I was towing my boat this weekend, and the chatter from the diff was much more pronounced. Pretty bad. I think I might actually get it fixed (it's been doing this noticeably for 3-4 months now).
Take the car to a ring and pinion shop and get a quote from them. They'll probably diagnose it correctly, and they're more likely to warranty the work. Plus it'll be cheaper.
Last time I took a car to the dealer for work (at least when I didn't know the tech), I brought it in for one specific problem and was told it would be done a few hours later. On my way to pick the car up, I got a call that I needed about 6 different things and they hadn't started the work on what I wanted them to do. I showed up, raised hell, looked at what they were trying to sell me, and reiterated what was already on my service order: FIX THIS - NOT THAT. I had brought the car in (my 94 mark) for a replacement of the boot where the steering shaft goes through the firewall. They wanted to sell me ball joints and tie-rod ends... because one had a bad boot.